Schematic illustration of graph analysis applied to multi channel recordings of brain activity (fMRI, EEG or MEG). The first step (panel A) consists of computing a measure of correlation between all possible pairs of channels of recorded brain activity. The correlations can be represented in a correlation diagram (panel B, strength of correlation indicated with black white scale). Next a threshold is applied, and all correlations above the threshold are considered to be edges connecting vertices (channels). Thus, the correlation matrix is converted to a unweighted graph (panel C). From this graph various measures such as the clustering coefficient C and the path length L can be computed. For comparisons, random networks can be generated by shuffling the cells of the original correlation matrix of panel B. This shuffling preserves the symmetry of the matrix, and the mean strength of the correlations (panel D). From the random matrices graphs are constructed, and graph measures are computed as before. The mean values of the graph measures for the ensemble of random networks are determined. Finally, The ratio of the graph measures of the original network and the mean values of the graph measures of the random networks can be determined (panel F).